3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14165

Details:

PFam ID : PF14165

PFam Domain Description : YtzH-like protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 23

Average sequence length: 82

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14165	Q2B6C8_9BACI_1_64	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14165	Q8EP24_OCEIH_3_90	100

Sequence based PCA Plot of the family - PF14165 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=1 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay