3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14160

Details:

PFam ID : PF14160

PFam Domain Description : Centrosome-associated C terminus

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 40

Average sequence length: 104.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14160	D2GWG1_AILME_144_197	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14160	D3ZKX3_RAT_139_263	100

Sequence based PCA Plot of the family - PF14160 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay