3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14158

Details:

PFam ID : PF14158

PFam Domain Description : YndJ-like protein

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 36

Average sequence length: 241.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14158	D0LG59_HALO1_50_326	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14158	D0LG59_HALO1_50_326	91.4

Sequence based PCA Plot of the family - PF14158 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=134 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay