3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14150

Details:

PFam ID : PF14150

PFam Domain Description : YesK-like protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 27

Average sequence length: 68.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14150	D5DZ38_BACMQ_4_82	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14150	A8FEZ3_BACP2_40_120	100

Sequence based PCA Plot of the family - PF14150 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay