3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14146

Details:

PFam ID : PF14146

PFam Domain Description : Domain of unknown function (DUF4305)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 30

Average sequence length: 36.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14146	A7SEG5_NEMVE_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14146	Q8ESI1_OCEIH_17_54	100

Sequence based PCA Plot of the family - PF14146 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay