3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14139

Details:

PFam ID : PF14139

PFam Domain Description : YpzG-like protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 21

Average sequence length: 48.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14139	B7VDY1_9BACT_16_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14139	F2F0H6_9BACL_1_49	100

Sequence based PCA Plot of the family - PF14139 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=23 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay