3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14138

Details:

PFam ID : PF14138

PFam Domain Description : Cytochrome c oxidase assembly protein COX16

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 103

Average sequence length: 79.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14138	B7VDY1_9BACT_16_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14138	COX16_SCHPO_20_102	100

Sequence based PCA Plot of the family - PF14138 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=101 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay