3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14135

Details:

PFam ID : PF14135

PFam Domain Description : Domain of unknown function (DUF4302)

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 86

Average sequence length: 235.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14135	E3ATY8_9SPHI_32_254	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14135	E4MFB9_9BACT_22_273	100

Sequence based PCA Plot of the family - PF14135 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=46 Length=8
Motif2 Start=6 Length=8
Motif3 Start=87 Length=11
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay