3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14134

Details:

PFam ID : PF14134

PFam Domain Description : Domain of unknown function (DUF4301)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 79

Average sequence length: 484.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14134	A6TJT2_ALKMQ_1_143	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14134	A8ZW94_DESOH_6_527	100

Sequence based PCA Plot of the family - PF14134 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=78 Length=8
Motif2 Start=8 Length=8
Motif3 Start=123 Length=11
Motif4 Start=42 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay