3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14133

Details:

PFam ID : PF14133

PFam Domain Description : Domain of unknown function (DUF4300)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 56

Average sequence length: 237.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14133	B1CAG3_9FIRM_1_157	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14133	D5Q0X1_CLODI_33_290	100

Sequence based PCA Plot of the family - PF14133 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=233 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay