3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14129

Details:

PFam ID : PF14129

PFam Domain Description : Domain of unknown function (DUF4296)

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 90

Average sequence length: 85.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14129	C7PRC6_CHIPD_23_118	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14129	C7PRC6_CHIPD_23_118	100

Sequence based PCA Plot of the family - PF14129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=44 Length=8
Motif3 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay