3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14124

Details:

PFam ID : PF14124

PFam Domain Description : Domain of unknown function (DUF4291)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 107

Average sequence length: 166.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14124	D2W0E5_NAEGR_51_258	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14124	D2W0E5_NAEGR_51_258	100

Sequence based PCA Plot of the family - PF14124 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=156 Length=8
Motif2 Start=52 Length=8
Motif3 Start=11 Length=8
Motif4 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay