3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14123

Details:

PFam ID : PF14123

PFam Domain Description : Domain of unknown function (DUF4290)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 87

Average sequence length: 172.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14123	C9PUF5_9BACT_16_96	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14123	B3EU73_AMOA5_2_179	100

Sequence based PCA Plot of the family - PF14123 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=8
Motif2 Start=106 Length=8
Motif3 Start=62 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay