3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14121

Details:

PFam ID : PF14121

PFam Domain Description : Domain of unknown function (DUF4289)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 96

Average sequence length: 607.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14121	D0J928_BLASP_39_601	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14121	C0BHD1_9BACT_87_728	100

Sequence based PCA Plot of the family - PF14121 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=418 Length=8
Motif2 Start=460 Length=8
Motif3 Start=620 Length=8
Motif4 Start=84 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay