3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14118

Details:

PFam ID : PF14118

PFam Domain Description : YfzA-like protein

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 15

Average sequence length: 87.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14118	Q813G5_BACCR_1_67	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14118	C1PEB9_BACCO_1_102	100

Sequence based PCA Plot of the family - PF14118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay