3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14117

Details:

PFam ID : PF14117

PFam Domain Description : Domain of unknown function (DUF4287)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 120

Average sequence length: 60.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14117	B3ES19_AMOA5_28_85	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14117	D8I765_AMYMU_2_61	100

Sequence based PCA Plot of the family - PF14117 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay