3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14113

Details:

PFam ID : PF14113

PFam Domain Description : Domain of unknown function (DUF4285)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 82

Average sequence length: 125.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14113	E4VNF1_9HELI_2_69	81.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14113	C3XIL7_9HELI_86_246	100

Sequence based PCA Plot of the family - PF14113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=5 Length=17
Motif3 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay