3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14111

Details:

PFam ID : PF14111

PFam Domain Description : Domain of unknown function (DUF4283)

Number of Sequence in 50% Dataset : 170

Number of Sequence in Full Dataset : 535

Average sequence length: 121.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14111	Q4JWP0_CORJK_11_124	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14111	O81518_ARATH_134_254	100

Sequence based PCA Plot of the family - PF14111 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=45 Length=8
Motif3 Start=2 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay