3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14109

Details:

PFam ID : PF14109

PFam Domain Description : GldH lipoprotein

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 92

Average sequence length: 130.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14109	Q1VQW1_9FLAO_21_157	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14109	Q1VQW1_9FLAO_21_157	100

Sequence based PCA Plot of the family - PF14109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=81 Length=8
Motif3 Start=123 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay