3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14107

Details:

PFam ID : PF14107

PFam Domain Description : Domain of unknown function (DUF4280)

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 122

Average sequence length: 112.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14107	D1ARA8_SEBTE_7_49	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14107	C7GED2_9FIRM_61_219	99.1

Sequence based PCA Plot of the family - PF14107 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=81 Length=8
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay