3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14105

Details:

PFam ID : PF14105

PFam Domain Description : Domain of unknown function (DUF4278)

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 113

Average sequence length: 55.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14105	B0C6W6_ACAM1_1_65	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14105	B2J4D9_NOSP7_1_72	100

Sequence based PCA Plot of the family - PF14105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay