3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14104

Details:

PFam ID : PF14104

PFam Domain Description : Domain of unknown function (DUF4277)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 93

Average sequence length: 98.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14104	A8YEV3_MICAE_1_42	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14104	C8W6S5_DESAS_22_155	100

Sequence based PCA Plot of the family - PF14104 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay