3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14100

Details:

PFam ID : PF14100

PFam Domain Description : Methane oxygenase PmoA

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 126

Average sequence length: 279.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14100	D5STQ6_PLAL2_157_464	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14100	E8R6E9_ISOPI_130_442	100

Sequence based PCA Plot of the family - PF14100 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=176 Length=8
Motif2 Start=238 Length=8
Motif3 Start=29 Length=8
Motif4 Start=51 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay