3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14094

Details:

PFam ID : PF14094

PFam Domain Description : Domain of unknown function (DUF4272)

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 78

Average sequence length: 188.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14094	B5JE24_9BACT_2_97	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14094	Q4JTH3_CORJK_168_395	100

Sequence based PCA Plot of the family - PF14094 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=38 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay