3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14092

Details:

PFam ID : PF14092

PFam Domain Description : Domain of unknown function (DUF4270)

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 116

Average sequence length: 454.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14092	A6EB32_9SPHI_27_474	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14092	A6EB32_9SPHI_27_474	100

Sequence based PCA Plot of the family - PF14092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=380 Length=8
Motif2 Start=42 Length=8
Motif3 Start=186 Length=8
Motif4 Start=440 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay