3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14090

Details:

PFam ID : PF14090

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 106

Average sequence length: 64.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14090	D9SHV0_GALCS_37_103	54.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14090	A5EUX7_DICNV_13_82	100

Sequence based PCA Plot of the family - PF14090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay