3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14087

Details:

PFam ID : PF14087

PFam Domain Description : Domain of unknown function (DUF4267)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 101

Average sequence length: 109.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14087	E7NC36_9ACTO_11_123	32.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14087	C7ZHS7_NECH7_12_131	100

Sequence based PCA Plot of the family - PF14087 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=45 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay