3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14077

Details:

PFam ID : PF14077

PFam Domain Description : Alternative WD40 repeat motif

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 9

Average sequence length: 42

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14077	E4K4X4_9FIRM_19_81	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14077	F1LR39_RAT_387_429	100

Sequence based PCA Plot of the family - PF14077 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay