3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14076

Details:

PFam ID : PF14076

PFam Domain Description : Domain of unknown function (DUF4258)

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 200

Average sequence length: 71.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14076	E4K4X4_9FIRM_19_81	85.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14076	B3ZXM3_BACCE_38_114	94.4

Sequence based PCA Plot of the family - PF14076 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=34 Length=8
Motif2 Start=3 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay