3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14064

Details:

PFam ID : PF14064

PFam Domain Description : HmuY protein

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 142

Average sequence length: 172.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14064	D1W2Z7_9BACT_38_130	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14064	D5BEN3_ZUNPS_46_396	100

Sequence based PCA Plot of the family - PF14064 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=157 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay