3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14054

Details:

PFam ID : PF14054

PFam Domain Description : Domain of unknown function (DUF4249)

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 171

Average sequence length: 281.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14054	C9PWP8_9BACT_5_205	84.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14054	D3I3G6_9BACT_5_358	100

Sequence based PCA Plot of the family - PF14054 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=162 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay