3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14053

Details:

PFam ID : PF14053

PFam Domain Description : Domain of unknown function (DUF4248)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 117

Average sequence length: 67.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14053	D5ES55_PRER2_2_68	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14053	D6D2C5_9BACE_16_86	100

Sequence based PCA Plot of the family - PF14053 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=61 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay