3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14052

Details:

PFam ID : PF14052

PFam Domain Description : Capsule assembly protein Wzi

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 176

Average sequence length: 446.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14052	A6EI36_9SPHI_36_521	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14052	A0XXW4_9GAMM_36_510	100

Sequence based PCA Plot of the family - PF14052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=283 Length=8
Motif2 Start=378 Length=8
Motif3 Start=367 Length=8
Motif4 Start=305 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay