3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14049

Details:

PFam ID : PF14049

PFam Domain Description : Dppa2/4 conserved region in higher vertebrates

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 15

Average sequence length: 61.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14049	A7T0M3_NEMVE_136_203	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14049	F1M2U7_RAT_65_148	100

Sequence based PCA Plot of the family - PF14049 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay