3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14048 Details: PFam ID : PF14048 PFam Domain Description : C-terminal domain of methyl-CpG binding protein 2 and 3 Number of Sequence in 50% Dataset : 15 Number of Sequence in Full Dataset : 49 Average sequence length: 94.2 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF14048A7T0M3_NEMVE_136_203No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF14048D4A696_RAT_105_213100 Sequence based PCA Plot of the family - PF14048 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=28 Length=8Motif2 Start=19 Length=8Motif3 Start=10 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF14048
PFam Domain Description : C-terminal domain of methyl-CpG binding protein 2 and 3
Number of Sequence in 50% Dataset : 15
Number of Sequence in Full Dataset : 49
Average sequence length: 94.2
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER