3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14047

Details:

PFam ID : PF14047

PFam Domain Description : Dppa2/4 conserved region

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 21

Average sequence length: 61.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14047	A7T0M3_NEMVE_136_203	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14047	A7T0M3_NEMVE_136_203	100

Sequence based PCA Plot of the family - PF14047 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=50 Length=8
Motif2 Start=2 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay