3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14042

Details:

PFam ID : PF14042

PFam Domain Description : Domain of unknown function (DUF4247)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 47

Average sequence length: 155.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14042	C2CSD1_CORST_23_129	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14042	C0E0W2_9CORY_11_157	100

Sequence based PCA Plot of the family - PF14042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=138 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay