3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14040

Details:

PFam ID : PF14040

PFam Domain Description : Deoxyribonuclease NucA/NucB

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 76

Average sequence length: 107.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14040	B6QVU1_PENMQ_1348_1431	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14040	E7A0K5_9BASI_97_182	100

Sequence based PCA Plot of the family - PF14040 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay