3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14011

Details:

PFam ID : PF14011

PFam Domain Description : EspG family

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 129

Average sequence length: 235.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14011	D8I2X7_AMYMU_9_275	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14011	D5P569_9MYCO_16_290	99.2

Sequence based PCA Plot of the family - PF14011 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=213 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay