3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14009

Details:

PFam ID : PF14009

PFam Domain Description : Domain of unknown function (DUF4228)

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 417

Average sequence length: 163.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14009	Q7S852_NEUCR_427_490	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14009	B9FSE3_ORYSJ_1_58	99.0

Sequence based PCA Plot of the family - PF14009 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=1 Length=8
Motif3 Start=73 Length=8
Motif4 Start=169 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay