3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14008

Details:

PFam ID : PF14008

PFam Domain Description : Iron/zinc purple acid phosphatase-like protein C

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 411

Average sequence length: 63.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14008	Q7S852_NEUCR_427_490	84.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14008	D0MZH6_PHYIT_564_639	100

Sequence based PCA Plot of the family - PF14008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=37 Length=8
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay