3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14003

Details:

PFam ID : PF14003

PFam Domain Description : YlbE-like protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 26

Average sequence length: 61.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14003	Q6HEM9_BACHK_12_76	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14003	Q6HEM9_BACHK_12_76	100

Sequence based PCA Plot of the family - PF14003 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=18 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay