3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14002

Details:

PFam ID : PF14002

PFam Domain Description : YniB-like protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 46

Average sequence length: 160.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14002	F0JNC4_ESCFE_1_142	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14002	Q4KEJ9_PSEF5_53_219	100

Sequence based PCA Plot of the family - PF14002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=84 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay