3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14001

Details:

PFam ID : PF14001

PFam Domain Description : YdfZ protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 23

Average sequence length: 59.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14001	Q9AGA3_ECOLX_5_54	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14001	E5YGC3_9ENTR_3_66	100

Sequence based PCA Plot of the family - PF14001 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay