3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14000

Details:

PFam ID : PF14000

PFam Domain Description : DNA packaging protein FI

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 27

Average sequence length: 108.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14000	Q9AGA3_ECOLX_5_54	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14000	A7ZNB1_ECO24_3_134	100

Sequence based PCA Plot of the family - PF14000 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay