3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13999

Details:

PFam ID : PF13999

PFam Domain Description : MarB protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 20

Average sequence length: 57.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13999	Q9AGA3_ECOLX_5_54	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13999	A7MPT0_ENTS8_5_69	94.7

Sequence based PCA Plot of the family - PF13999 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay