3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13997

Details:

PFam ID : PF13997

PFam Domain Description : YqjK-like protein

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 65

Average sequence length: 71.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13997	C0AZA3_9ENTR_17_48	55

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13997	E1VA79_HALED_16_92	100

Sequence based PCA Plot of the family - PF13997 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay