3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13990

Details:

PFam ID : PF13990

PFam Domain Description : YjcZ-like protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 23

Average sequence length: 219

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13990	C9Y1B5_CROTZ_1_141	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13990	D0SVD9_ACILW_17_291	100

Sequence based PCA Plot of the family - PF13990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay