3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13987

Details:

PFam ID : PF13987

PFam Domain Description : YedD-like protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 21

Average sequence length: 106.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13987	E9YS11_ECOLX_258_390	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13987	B2VES4_ERWT9_26_133	100

Sequence based PCA Plot of the family - PF13987 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=18
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay