3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13983

Details:

PFam ID : PF13983

PFam Domain Description : YsaB-like lipoprotein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 14

Average sequence length: 70.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13983	E9YS11_ECOLX_258_390	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13983	D6DTQ4_ENTCL_1_68	100

Sequence based PCA Plot of the family - PF13983 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay